** package ‘crayon’ successfully unpacked and MD5 sums checked * removing ‘/Users/jespinoz/anaconda/envs/r_test/lib/R/library/utf8’ Make: x86_64-apple-darwin13.4.0-clang: No such file or directoryĮRROR: compilation failed for package ‘utf8’ X86_64-apple-darwin13.4.0-clang -I/Users/jespinoz/anaconda/envs/r_test/lib/R/include -DNDEBUG -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/jespinoz/anaconda/envs/r_test/include -Iutf8lite/src -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -I/Users/jespinoz/anaconda/envs/r_test/include -c as_utf8.c -o as_utf8.o ** package ‘utf8’ successfully unpacked and MD5 sums checked ** package ‘assertthat’ successfully unpacked and MD5 sums checked * installing *source* package ‘assertthat’. Installing package(s) ‘Biobase’, ‘IRanges’, ‘AnnotationDbi’Īlso installing the dependencies ‘assertthat’, ‘utf8’, ‘cli’, ‘crayon’, ‘pillar’, ‘rlang’, ‘bit’, ‘tibble’, ‘digest’, ‘bit64’, ‘blob’, ‘memoise’, ‘pkgconfig’, ‘Rcpp’, ‘BH’, ‘plogr’, ‘BiocGenerics’, ‘S4Vectors’, ‘DBI’, ‘RSQLite’Ĭontent type 'application/x-gzip' length 11612 bytes (11 KB) Updating HTML index of packages in '.Library'īiocases_group biocinstallRepos biocLite biocUpdatePackages biocValid biocVersion
‘/private/var/folders/6z/5vbtz_gmkr76ftgc3149dvtr0003c0/T/RtmpTCr3v4/downloaded_packages’ ** testing if installed package can be loadedīioconductor version 3.6 (BiocInstaller 1.28.0), ?biocLite for help * installing *source* package ‘BiocInstaller’. 'help.start()' for an HTML browser interface to help.Ĭontent type 'application/x-gzip' length 18624 bytes (18 KB) Type 'demo()' for some demos, 'help()' for on-line help, or
CONDA INSTALL GFORTRAN HOW TO
'citation()' on how to cite R or R packages in publications. Type 'contributors()' for more information and R is a collaborative project with many contributors. Natural language support but running in an English locale Type 'license()' or 'licence()' for distribution details. You are welcome to redistribute it under certain conditions.
CONDA INSTALL GFORTRAN SOFTWARE
R is free software and comes with ABSOLUTELY NO WARRANTY. First I tried to just the base bioconductor packges but there was the following error:Ĭopyright (C) 2017 The R Foundation for Statistical Computing
I'm having a lot of trouble trying to install WGCNA, edgeR, and limma.
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